I updated to iOS7 and my deleted photos came back.  How do I make sure this doesn't happen again?

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I updated to iOS7 and my deleted photos came back.  How do I make sure this doesn't happen again?  I want to get rid of the ones I already got rid of, but if they just keep coming back that will be a waste of time. 
Can anyone help?
When I sync with itunes, the photos sections says I am syncing with my iphone, so I assume that anything I physically delete from my iphone should not be showing up again.  Right?
Thanks in advance.
CM
PS- I don't use iphoto. 
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Is that really how sync works?
If you read this, http://support.apple.com/kb/ht4236  and this http://support.apple.com/kb/TS1314  they don't actually make how sync works very clear.  I had thought that syncing my device to itunes would allow I tunes to copy what was currently on my phone so that I could restore that information when needed ie if your phone dies and you need to do a clean install of the iOS system, you always have what is currently on your phone saved in Itunes.
Specifically reading this:
To delete Camera Roll photos and videos from your device
There are two methods to delete items from the Camera Roll:
Import the Camera Roll to your computer and choose to delete items after import.
Delete photos and videos from your device manually:
Open the Photos application and open the Camera Roll.
Tap the Action button.
Tap each photo to select it.
Tap the Delete button.
Note: For photos and videos you want to save, import them to your computer before deleting them from the Camera Roll.
What you seem to be saying is that iTunes saves every contact, message, photo etc and when you click sync, it reuploads things that you deleted?  This seems like it should work the opposite.  Make a mirror image of my iPhone on my computer, not make a mirror image of my computer onto my iPhone.  You delete things for a reason. 
Help- anyone else?  Is razmee209 right?

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